Arabidopsis lyrata      Asp-Based PTP      FCP

※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays a important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylate Ser5 in CTD domain of RNA polymerase II and play a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also act as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 27 genes.  Reviewed (0 or Unreviewed (27

No.StatusEKPD IDGene IDGene Name
1
EPS-ARL-00121
fgenesh2_kg.1__3134__AT1G29770.1
XM_002890783.1
2
EPS-ARL-00123
scaffold_502734.1
XM_002878008.1
3
EPS-ARL-00120
scaffold_800288.1
XM_002865183.1
4
EPS-ARL-00135
scaffold_502320.1
XM_002877818.1
5
EPS-ARL-00118
fgenesh2_kg.6__1160__AT5G11860.3
XM_002873489.1
6
EPS-ARL-00144
fgenesh2_kg.6__82__AT5G01270.1
XM_002870888.1
7
EPS-ARL-00119
fgenesh2_kg.1__3135__AT1G29780.1
XM_002890784.1
8
EPS-ARL-00126
fgenesh2_kg.1__2214__AT1G20320.1
XM_002893051.1
9
EPS-ARL-00139
scaffold_502321.1
XM_002877819.1
10
EPS-ARL-00129
fgenesh1_pm.C_scaffold_3001730
XM_002885271.1
11
EPS-ARL-00138
scaffold_301778.1
XM_002882882.1
12
EPS-ARL-00134
fgenesh2_kg.4__1360__AT2G33540.1
XM_002881241.1
13
EPS-ARL-00133
fgenesh2_kg.6__2819__AT4G06599.1
XM_002874429.1
14
EPS-ARL-00122
fgenesh2_kg.8__147__AT5G46410.2
XM_002865148.1
15
EPS-ARL-00142
scaffold_801945.1
XM_002864270.1
16
EPS-ARL-00141
scaffold_301777.1
XM_002882881.1
17
EPS-ARL-00143
scaffold_301792.1
XM_002885038.1
18
EPS-ARL-00127
fgenesh2_kg.1__3719__AT1G43600.1
XM_002891209.1
19
EPS-ARL-00125
scaffold_801941.1
XM_002864266.1
20
EPS-ARL-00140
fgenesh2_kg.4__1692__AT2G36540.1
XM_002879569.1
21
EPS-ARL-00131
scaffold_602417.1
XM_002872011.1
22
EPS-ARL-00137
Al_scaffold_0005_937
XM_002877170.1
23
EPS-ARL-00128
scaffold_302065.1
XM_002885170.1
24
EPS-ARL-00132
fgenesh1_pm.C_scaffold_8001433
XM_002864497.1
25
EPS-ARL-00124
fgenesh2_kg.1__4613__AT1G55900.1
XM_002891813.1
26
EPS-ARL-00130
scaffold_303287.1
XM_002885740.1
27
EPS-ARL-00136
Al_scaffold_0003_1590
XM_002882883.1