Arabidopsis thaliana      Asp-Based PTP      FCP

※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays a important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylate Ser5 in CTD domain of RNA polymerase II and play a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also act as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 26 genes.  Reviewed (6 or Unreviewed (20

No.StatusEKPD IDGene IDGene Name
1
EPS-ART-00130
AT5G58003
At5g58003; MTI20; CPL4
2
EPS-ART-00123
AT1G43600
AT1G43600; At1g43600
3
EPS-ART-00124
AT1G43610
AT1G43610
4
EPS-ART-00120
AT1G55900
At1g55900; EMB1860; TIM50; emb1860; F14J16.15
5
EPS-ART-00129
AT3G19595
AT3G19595
6
EPS-ART-00125
AT3G19600
AT3G19600; At3g19600
7
EPS-ART-00119
AT3G55960
At3g55960; F27K19_140; AT3G55960
8
EPS-ART-00116
AT4G18140
AT4G18140; SSP4b; At4g18140
9
EPS-ART-00113
AT5G11860
At5g11860; AT5G11860; SSP5; F14F18_30
10
EPS-ART-00117
AT1G29770
At1g29770; AT1G29770; F1N18.17
11
EPS-ART-00115
AT1G29780
AT1G29780; F1N18.16; At1g29780
12
EPS-ART-00128
AT5G23470
At5g23470; AT5G23470
13
EPS-ART-00138
AT4G21670
F17L22.130; FRY2, JOE1; CPL1; At4g21670
14
EPS-ART-00114
AT5G45700
At5g45700; AT5G45700
15
EPS-ART-00137
AT5G01270
At5g01270; CPL2; F7J8.250
16
EPS-ART-00118
AT5G46410
SSP4; AT5G46410; At5g46410
17
EPS-ART-00132
AT4G06599
AT4G06599; At4g06599; T11G11
18
EPS-ART-00126
AT3G17550
At3g17550; AT3G17550
19
EPS-ART-00122
AT5G54210
At5g54210; AT5G54210
20
EPS-ART-00133
AT2G33540
At2g33540; F4P9.31; CPL3
21
EPS-ART-00127
AT2G04930
At2g04930; AT2G04930
22
EPS-ART-00135
AT3G29760
At3g29760; AT3G29760
23
EPS-ART-00121
AT1G20320
F14O10.8; At1g20320; AT1G20320
24
EPS-ART-00134
AT2G36540
At2g36540; AT2G36540
25
EPS-ART-00131
AT2G02290
At2g02290; AT2G02290
26
EPS-ART-00136
AT4G26190
AT4G26190; At4g26190