Glycine max      Asp-Based PTP      FCP

※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays a important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylate Ser5 in CTD domain of RNA polymerase II and play a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also act as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 28 genes.  Reviewed (0 or Unreviewed (28

No.StatusEKPD IDGene IDGene Name
1
EPS-GLM-00226
GLYMA13G29710
2
EPS-GLM-00242
GLYMA19G37470
3
EPS-GLM-00224
GLYMA15G23380
4
EPS-GLM-00230
GLYMA14G01810
5
EPS-GLM-00235
GLYMA02G36420
6
EPS-GLM-00244
GLYMA18G42790
7
EPS-GLM-00228
GLYMA14G06430
8
EPS-GLM-00247
GLYMA13G25010
9
EPS-GLM-00225
GLYMA06G47250
10
EPS-GLM-00243
GLYMA04G32270
11
EPS-GLM-00220
GLYMA18G01020
12
EPS-GLM-00245
GLYMA07G17940
13
EPS-GLM-00232
GLYMA17G08260
14
EPS-GLM-00240
GLYMA13G06321
15
EPS-GLM-00229
GLYMA02G42450
16
EPS-GLM-00222
GLYMA09G11585
17
EPS-GLM-00236
GLYMA08G28920
18
EPS-GLM-00233
GLYMA05G30160
GMA.21382
19
EPS-GLM-00231
GLYMA02G46900
20
EPS-GLM-00238
GLYMA19G03910
21
EPS-GLM-00241
GLYMA06G22273
22
EPS-GLM-00239
GLYMA18G50410
23
EPS-GLM-00246
GLYMA08G27201
24
EPS-GLM-00234
GLYMA08G13320
25
EPS-GLM-00227
GLYMA15G09340
26
EPS-GLM-00221
GLYMA11G37100
27
EPS-GLM-00223
GLYMA04G15970
28
EPS-GLM-00237
GLYMA18G51840