Oryza glaberrima      Asp-Based PTP      FCP

※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays a important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylate Ser5 in CTD domain of RNA polymerase II and play a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also act as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 18 genes.  Reviewed (0 or Unreviewed (18

No.StatusEKPD IDGene IDGene Name
1
EPS-ORG-00096
ORGLA01G0190300
2
EPS-ORG-00097
ORGLA05G0224800
3
EPS-ORG-00104
ORGLA11G0129000
4
EPS-ORG-00106
ORGLA01G0259000
5
EPS-ORG-00103
ORGLA01G0329400
6
EPS-ORG-00110
ORGLA01G0258800
7
EPS-ORG-00095
ORGLA03G0378800
8
EPS-ORG-00108
ORGLA07G0005400
9
EPS-ORG-00100
ORGLA05G0171100
10
EPS-ORG-00111
ORGLA01G0316100
11
EPS-ORG-00094
ORGLA01G0209900
12
EPS-ORG-00102
ORGLA05G0130200
13
EPS-ORG-00099
ORGLA07G0058800
14
EPS-ORG-00098
ORGLA01G0300800
15
EPS-ORG-00105
ORGLA02G0311200
16
EPS-ORG-00109
ORGLA02G0311300
17
EPS-ORG-00107
ORGLA03G0316500
18
EPS-ORG-00101
ORGLA05G0197300