Oryza indica      Asp-Based PTP      FCP

※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays a important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylate Ser5 in CTD domain of RNA polymerase II and play a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also act as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 18 genes.  Reviewed (0 or Unreviewed (18

No.StatusEKPD IDGene IDGene Name
1
EPS-ORI-00127
BGIOSGA009203
OsI_09278
2
EPS-ORI-00130
BGIOSGA009204
OsI_09279
3
EPS-ORI-00115
BGIOSGA009436
OsI_14336
4
EPS-ORI-00121
BGIOSGA000774
OsI_03834
5
EPS-ORI-00129
BGIOSGA025020
OsI_24622
6
EPS-ORI-00120
BGIOSGA000547
OsI_04315
7
EPS-ORI-00126
BGIOSGA033908
OsI_36281
8
EPS-ORI-00131
BGIOSGA000463
OsI_04490
9
EPS-ORI-00125
BGIOSGA000402
OsI_04634
10
EPS-ORI-00117
BGIOSGA025372
OsI_25332
11
EPS-ORI-00124
BGIOSGA019803
OsI_19829
12
EPS-ORI-00128
BGIOSGA019802
OsI_19828
13
EPS-ORI-00119
BGIOSGA018617
OsI_18835
14
EPS-ORI-00122
BGIOSGA020007
OsI_20271
15
EPS-ORI-00123
BGIOSGA020174
OsI_20602
16
EPS-ORI-00118
BGIOSGA020372
OsI_21008
17
EPS-ORI-00114
BGIOSGA001070
OsI_03170
18
EPS-ORI-00116
BGIOSGA004038
OsI_02945