Oryza sativa      Asp-Based PTP      FCP

※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays a important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylate Ser5 in CTD domain of RNA polymerase II and play a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also act as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 19 genes.  Reviewed (0 or Unreviewed (19

No.StatusEKPD IDGene IDGene Name
1
EPS-ORS-00131
LOC_Os11g31890
LOC_Os11g31890
2
EPS-ORS-00135
LOC_Os07g01850
OsJ_22823
3
EPS-ORS-00119
LOC_Os01g47540
OsJ_02926; P0003E08.20-1; Os01g0665300
4
EPS-ORS-00120
LOC_Os03g63300
OsJ_13375; LOC_Os03g63300; OSJNBa0015N08.2; Os03g0850100, OSJNBb0096M04.20
5
EPS-ORS-00127
LOC_Os05g43770
Os05g0513200
6
EPS-ORS-00128
LOC_Os05g39070
OsJ_18850
7
EPS-ORS-00124
LOC_Os05g11570
OSJNBb0115F21.3; Os05g0205100
8
EPS-ORS-00132
LOC_Os02g55270
OsJ_08715; OJ1695_H09.20; OJ1004_E04.5
9
EPS-ORS-00136
LOC_Os02g55280
OsJ_08716
10
EPS-ORS-00121
LOC_Os01g43870
OsJ_02697
11
EPS-ORS-00125
LOC_Os01g61640
OsJ_03971; P0460C04.14; Os01g0833100
12
EPS-ORS-00137
LOC_Os01g63820
OJ1402_H07.29-1; OsJ_04124; P0683F02.6-1; Os01g0857000
13
EPS-ORS-00122
LOC_Os07g10690
14
EPS-ORS-00129
LOC_Os05g32430
OsJ_18418; Os05g0390500; OJ1057_G07.1
15
EPS-ORS-00130
LOC_Os01g65450
P0698A10.21; P0648C09.20; Os01g0875400; OsJ_04266
16
EPS-ORS-00126
LOC_Os01g55700
OsJ_03544
17
EPS-ORS-00133
LOC_Os03g54870
OSJNBb0081K01.13
18
EPS-ORS-00134
LOC_Os03g54850
OSJNBb0081K01.13
19
EPS-ORS-00123
LOC_Os05g49120
OsJ_19569