Solanum lycopersicum      Asp-Based PTP      FCP

※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays a important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylate Ser5 in CTD domain of RNA polymerase II and play a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also act as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 17 genes.  Reviewed (0 or Unreviewed (17

No.StatusEKPD IDGene IDGene Name
1
EPS-SOL-00137
Solyc01g103850.2
Solyc01g103850.2
2
EPS-SOL-00139
Solyc07g005460.2
Solyc07g005460.2
3
EPS-SOL-00131
Solyc04g045630.2
Solyc04g045630.2
4
EPS-SOL-00142
Solyc02g065790.2
Solyc02g065790.2
5
EPS-SOL-00132
Solyc02g071250.2
Solyc02g071250.2
6
EPS-SOL-00144
Solyc12g063050.1
cen12_5; CEN12_5
7
EPS-SOL-00146
Solyc07g065400.2
Solyc07g065400.2
8
EPS-SOL-00133
Solyc02g071930.1
Solyc02g071930.1
9
EPS-SOL-00141
Solyc09g008950.1
Solyc09g008950.1
10
EPS-SOL-00143
Solyc06g069450.2
Solyc06g069450.2
11
EPS-SOL-00147
Solyc09g014440.2
Solyc09g014440.2
12
EPS-SOL-00135
Solyc06g051520.2
Solyc06g051520.2
13
EPS-SOL-00140
Solyc09g008960.1
Solyc09g008960.1
14
EPS-SOL-00136
Solyc10g006020.2
Solyc10g006020.2
15
EPS-SOL-00145
Solyc03g114990.2
Solyc03g114990.2
16
EPS-SOL-00134
Solyc05g052580.2
Solyc05g052580.2
17
EPS-SOL-00138
Solyc07g005450.2
Solyc07g005450.2