Vitis vinifera      Asp-Based PTP      FCP

※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays a important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylate Ser5 in CTD domain of RNA polymerase II and play a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also act as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 16 genes.  Reviewed (0 or Unreviewed (16

No.StatusEKPD IDGene IDGene Name
1
EPS-VIV-00106
Vv13s0067g00940
VIT_13s0067g00940
2
EPS-VIV-00110
Vv11s0016g00250
VIT_11s0016g00250
3
EPS-VIV-00102
Vv10s0003g02690
VIT_10s0003g02690
4
EPS-VIV-00109
Vv12s0035g00640
VIT_12s0035g00640
5
EPS-VIV-00116
Vv03s0063g02700
VITISV_003260
6
EPS-VIV-00115
Vv08s0007g04010
VIT_08s0007g04010
7
EPS-VIV-00105
Vv08s0105g00340
VIT_08s0105g00340
8
EPS-VIV-00104
Vv13s0175g00210
VITISV_037605
9
EPS-VIV-00107
Vv19s0015g00260
VIT_19s0015g00260
10
EPS-VIV-00103
Vv01s0010g03570
VIT_01s0010g03570
11
EPS-VIV-00112
Vv00s0672g00010
VITISV_002430
12
EPS-VIV-00117
Vv08s0007g02130
VIT_08s0007g02130
13
EPS-VIV-00111
Vv01s0244g00060
VIT_01s0244g00060
14
EPS-VIV-00113
Vv14s0068g00380
VIT_14s0068g00380
15
EPS-VIV-00114
Vv17s0000g05200
VIT_17s0000g05200
16
EPS-VIV-00108
Vv12s0057g00900
VIT_12s0057g00900