EKS-RAN-00382
Eukaryotic Protein Kinase & Protein Phosphatase Database
TagContent
EKPD IDEKS-RAN-00382
Classification
Group/FamilyScoreE-ValueStartEndDomain Length
TK/Src444.01.8E-133247497251
StatusReviewed
Ensembl ProteinENSRNOP00000011130
UniProt AccessionQ07014; Q63320;
Protein NameTyrosine-protein kinase Lyn
Protein Synonyms/Alias V-yes-1 Yamaguchi sarcoma viral related oncogene homolog; p53Lyn; p56Lyn;
Gene NameLyn
Gene Synonyms/Alias Lyn;
Ensembl Information
Ensembl Gene IDEnsembl Protein IDEnsembl Transcript ID
ENSRNOG00000008180ENSRNOP00000011130ENSRNOT00000011130
OrganismRattus norvegicus
Functional DescriptionNon-receptor tyrosine-protein kinase that transmitssignals from cell surface receptors and plays an important role in the regulation of innate and adaptive immune responses, hematopoiesis, responses to growth factors and cytokines, integrin signaling, but also responses to DNA damage and genotoxic agents. Functions primarily as negative regulator, but can also function as activator, depending on the context. Required for the initiation of the B-cell response, but also for its down- regulation and termination. Plays an important role in the regulation of B-cell differentiation, proliferation, survival and apoptosis, and is important for immune self-tolerance. Acts downstream of several immune receptors, including the B-cell receptor, CD79A, CD79B, CD5, CD19, CD22, FCER1, FCGR2, FCGR1A, TLR2 and TLR4. Plays a role in the inflammatory response to bacterial lipopolysaccharide. Mediates the responses to cytokines and growth factors in hematopoietic progenitors, platelets, erythrocytes, and in mature myeloid cells, such as dendritic cells, neutrophils and eosinophils. Acts downstream of EPOR, KIT, MPL, the chemokine receptor CXCR4, as well as the receptors for IL3, IL5 and CSF2. Plays an important role in integrin signaling. Regulates cell proliferation, survival, differentiation, migration, adhesion, degranulation, and cytokine release. Down- regulates signaling pathways by phosphorylation of immunoreceptor tyrosine-based inhibitory motifs (ITIM), that then serve as binding sites for phosphatases, such as PTPN6/SHP-1, PTPN11/SHP-2 and INPP5D/SHIP-1, that modulate signaling by dephosphorylation of kinases and their substrates. Phosphorylates LIME1 in response to CD22 activation. Phosphorylates BTK, CBL, CD5, CD19, CD72, CD79A, CD79B, CSF2RB, DOK1, HCLS1, LILRB3/PIR-B, MS4A2/FCER1B, PTK2B/PYK2, SYK and TEC. Promotes phosphorylation of SIRPA, PTPN6/SHP-1, PTPN11/SHP-2 and INPP5D/SHIP-1. Required for rapid phosphorylation of FER in response to FCER1 activation. Mediates KIT phosphorylation. Acts as an effector of EPOR (erythropoietin receptor) in controlling KIT expression and may play a role in erythroid differentiation during the switch between proliferation and maturation. Depending on the context, activates or inhibits several signaling cascades. Regulates phosphatidylinositol 3- kinase activity and AKT1 activation. Regulates activation of the MAP kinase signaling cascade, including activation of MAP2K1/MEK1, MAPK1/ERK2, MAPK3/ERK1, MAPK8/JNK1 and MAPK9/JNK2. Mediates activation of STAT5A and/or STAT5B (By similarity). Phosphorylates LPXN on 'Tyr-72' (By similarity).
Protein Length512
Protein Sequence
(FASTA)
MGCIKSKRKD NLNDDGVDMK TQPVRNTDRT IYVRDPTSNK QQRPVPESQL LPGQRFQAKD 60
PEEQGDIVVA LYPYDGIHPD DLSFKKGEKM KVLEEHGEWW KAKSLSSKRE GFIPSNYVAK 120
VNTLETEEWF FKDITRKDAE RQLLAPGNSA GAFLIRESET LKGSFSLSVR DYDPMHGDVI 180
KHYKIRSLDN GGYYISPRIT FPCISDMIKH YQKQSDGLCR RLEKACISPK PQKPWDKDAW 240
EIPRESIKLV KKLGAGQFGE VWMGYYNNST KVAVKTLKPG TMSAQAFLEE ANLMKTLQHD 300
KLVRLYAVVT KEEPIYIITE FMAKGSLLDF LKSDEGSKVL LPKLIDFSAQ IAEGMAYIER 360
KNYIHRDLRA ANVLVSESLM CKIADFGLAR VIEDNEYTAR EGAKFPIKWT APEAINFGCF 420
TIKSDVWSFG ILLYEIVTYG KIPYPGRTNA DVMTALSQGY RMPRMENCPD ELYDIMKMCW 480
KESAEERPTF DYLQSVLDDF YTATEGQYQQ QP 512
Nucleotide Sequence
(FASTA)
ATGGGATGTA TTAAATCAAA AAGGAAAGAC AATCTGAATG ACGATGGAGT AGATATGAAG 60
ACTCAACCAG TACGTAATAC TGACCGAACT ATTTATGTGA GAGATCCAAC GTCCAATAAA 120
CAGCAAAGGC CAGTTCCTGA ATCTCAACTT TTACCAGGAC AGAGATTTCA AGCAAAAGAT 180
CCAGAGGAGC AAGGGGACAT TGTGGTGGCC TTGTATCCCT ATGATGGCAT CCACCCAGAC 240
GACTTGTCTT TCAAGAAAGG AGAAAAGATG AAAGTTCTGG AAGAGCACGG GGAGTGGTGG 300
AAAGCTAAGT CCCTTTCATC AAAGAGAGAA GGCTTCATCC CCAGCAACTA CGTGGCCAAG 360
GTCAACACCT TAGAAACCGA AGAGTGGTTC TTCAAGGACA TAACAAGGAA AGATGCAGAA 420
CGACAGCTTC TGGCACCAGG GAACAGTGCC GGGGCTTTCC TGATCAGAGA AAGTGAAACT 480
TTAAAGGGAA GCTTCTCTCT TTCCGTCAGA GATTACGACC CTATGCATGG CGACGTCATT 540
AAGCACTACA AAATCAGAAG CCTGGACAAT GGTGGTTATT ACATCTCTCC GAGGATCACT 600
TTTCCCTGTA TCAGTGACAT GATTAAGCAT TACCAAAAGC AGTCTGATGG TCTATGCAGA 660
AGACTGGAGA AGGCATGCAT CAGTCCCAAA CCACAGAAGC CATGGGATAA AGATGCTTGG 720
GAGATCCCCC GGGAGTCCAT TAAGCTGGTG AAAAAACTCG GCGCAGGGCA GTTCGGGGAA 780
GTCTGGATGG GTTACTATAA CAACAGCACA AAAGTGGCTG TAAAGACCCT CAAGCCTGGC 840
ACCATGTCTG CTCAAGCATT CCTGGAAGAG GCCAACCTCA TGAAGACCTT GCAGCATGAC 900
AAGCTAGTGC GGCTGTATGC CGTGGTCACC AAGGAGGAGC CCATCTACAT CATTACCGAG 960
TTCATGGCCA AGGGTAGCTT GCTGGATTTC CTCAAGAGTG ACGAAGGCAG CAAGGTTCTG 1020
CTCCCGAAAC TCATTGACTT TTCAGCTCAG ATTGCAGAAG GCATGGCGTA CATCGAGCGG 1080
AAGAACTACA TCCACCGCGA TCTGCGAGCT GCCAACGTGC TGGTCTCTGA GTCTCTCATG 1140
TGCAAGATTG CAGACTTTGG CCTCGCGAGA GTAATCGAAG ATAATGAATA CACAGCGAGG 1200
GAAGGTGCCA AGTTCCCTAT CAAGTGGACG GCTCCAGAGG CCATCAACTT CGGCTGCTTC 1260
ACTATCAAGT CTGACGTGTG GTCCTTCGGA ATTCTCCTGT ACGAGATCGT CACCTATGGG 1320
AAGATTCCCT ACCCAGGGAG AACTAACGCA GATGTGATGA CCGCACTGTC ACAGGGGTAC 1380
CGAATGCCAC GAATGGAGAA CTGTCCAGAT GAGCTCTATG ACATCATGAA AATGTGCTGG 1440
AAGGAATCAG CAGAGGAGAG GCCAACCTTT GACTACTTAC AGAGTGTACT GGATGACTTC 1500
TACACTGCCA CGGAAGGGCA GTATCAGCAG CAGCCATAG 1539
Domain Profile
S: 1     lklvkklGeGqfGevwlgkwkgsvkvavktlkegtlspeafleeaqilkklrheklvkly  60
         +klvkklG+GqfGevw+g++++s+kvavktlk+gt+s +afleea+++k+l+h+klv+ly
Q: 247   IKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSAQAFLEEANLMKTLQHDKLVRLY  306
         689*********************************************************
S: 61    avvseeePiyivtelmakGslldflkeeegkklklpklvdlaaqvaeGmayleeknlihr  120
         avv++eePiyi+te+makGslldflk++eg+k+ lpkl+d++aq+aeGmay+e+kn+ihr
Q: 307   AVVTKEEPIYIITEFMAKGSLLDFLKSDEGSKVLLPKLIDFSAQIAEGMAYIERKNYIHR  366
         ************************************************************
S: 121   dlaarnvlvgeslvvkvadfGlarlieddeytakegaklPikWtaPeaiklgkftiksdv  180
         dl+a+nvlv+esl++k+adfGlar+ied+eyta+egak+PikWtaPeai++g+ftiksdv
Q: 367   DLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDV  426
         ************************************************************
S: 181   WsfGillteivtkGkvPypGmtneevleqvergyrlprpeecpeelyelllecwkkdpee  240
         WsfGill+eivt+Gk+PypG tn++v++++++gyr+pr+e+cp+ely+++++cwk+++ee
Q: 427   WSFGILLYEIVTYGKIPYPGRTNADVMTALSQGYRMPRMENCPDELYDIMKMCWKESAEE  486
         ************************************************************
S: 241   rPtfetlqevl  251
         rPtf++lq+vl
Q: 487   RPTFDYLQSVL  497
         ********986
Domain Sequence
(FASTA)
IKLVKKLGAG QFGEVWMGYY NNSTKVAVKT LKPGTMSAQA FLEEANLMKT LQHDKLVRLY 60
AVVTKEEPIY IITEFMAKGS LLDFLKSDEG SKVLLPKLID FSAQIAEGMA YIERKNYIHR 120
DLRAANVLVS ESLMCKIADF GLARVIEDNE YTAREGAKFP IKWTAPEAIN FGCFTIKSDV 180
WSFGILLYEI VTYGKIPYPG RTNADVMTAL SQGYRMPRME NCPDELYDIM KMCWKESAEE 240
RPTFDYLQSV L 251
KeywordAdaptive immunity; Alternative splicing; ATP-binding; Cell membrane; Complete proteome; Cytoplasm; Golgi apparatus; Immunity; Inflammatory response; Innate immunity; Kinase; Lipoprotein; Membrane; Myristate; Nucleotide-binding; Nucleus; Palmitate; Phosphoprotein; Proto-oncogene; Reference proteome; SH2 domain; SH3 domain; Transferase; Tyrosine-protein kinase; Ubl conjugation.
Sequence SourceEnsembl
Orthology
Ortholog group
Ailuropoda melanoleuca"; ?>Anolis carolinensis"; ?>Bos taurus"; ?>Callithrix jacchus"; ?>Canis familiaris"; ?>Cavia porcellus"; ?>Danio rerio"; ?>Equus caballus"; ?>Gadus morhua"; ?>Gallus gallus"; ?>Gasterosteus aculeatus"; ?>Gorilla gorilla"; ?>Homo sapiens"; ?>Ictidomys tridecemlineatus"; ?>Latimeria chalumnae"; ?>Loxodonta africana"; ?>Macaca mulatta"; ?>Monodelphis domestica"; ?>Mus musculus"; ?>Mustela putorius furo"; ?>Myotis lucifugus"; ?>Nomascus leucogenys"; ?>Oreochromis niloticus"; ?>Ornithorhynchus anatinus"; ?>Oryctolagus cuniculus"; ?>Oryzias latipes"; ?>Otolemur garnettii"; ?>Pan troglodytes"; ?>Pelodiscus sinensis"; ?>Pongo abelii"; ?>Sarcophilus harrisii"; ?>Sus scrofa"; ?>Taeniopygia guttata"; ?>Tarsius syrichta"; ?>Tetraodon nigroviridis"; ?>Xenopus tropicalis"; ?>Xiphophorus maculatus"; ?>
EKS-AIM-00342
EKS-ANC-00358
EKS-BOT-00368
EKS-CAJ-00372
EKS-CAF-00369
EKS-CAP-00401
EKS-DAR-00748
EKS-EQC-00359
EKS-GAM-00222
EKS-GAG-00312
EKS-GAA-00452
EKS-GOG-00359
EKS-HOS-00374
EKS-ICT-00348
EKS-LAC-00384
EKS-LOA-00377
EKS-MAM-00368
EKS-MOD-00359
EKS-MUM-00400
EKS-MUP-00362
EKS-MYL-00366
EKS-NOL-00336
EKS-ORN-00477
EKS-ORA-00322
EKS-ORC-00346
EKS-ORL-00439
EKS-OTG-00372
EKS-PAT-00348
EKS-PES-00327
EKS-POA-00358
EKS-SAH-00338
EKS-SUS-00327
EKS-TAG-00441
EKS-TAS-00040
EKS-TEN-00466
EKS-XET-00488
EKS-XIM-00465
Gene Ontology
GO:0034666; C:alpha2-beta1 integrin complex
GO:0005794; C:Golgi apparatus
GO:0045121; C:membrane raft
GO:0030061; C:mitochondrial crista
GO:0005758; C:mitochondrial intermembrane space
GO:0005634; C:nucleus
GO:0048471; C:perinuclear region of cytoplasm
GO:0014069; C:postsynaptic density
GO:0005524; F:ATP binding
GO:0043208; F:glycosphingolipid binding
GO:0005178; F:integrin binding
GO:0004715; F:non-membrane spanning protein tyrosine kinase activity
GO:0004713; F:protein tyrosine kinase activity
GO:0001782; P:B cell homeostasis
GO:0050853; P:B cell receptor signaling pathway
GO:0031668; P:cellular response to extracellular stimulus
GO:0034605; P:cellular response to heat
GO:0071300; P:cellular response to retinoic acid
GO:0050663; P:cytokine secretion
GO:0097028; P:dendritic cell differentiation
GO:0030218; P:erythrocyte differentiation
GO:0002774; P:Fc receptor mediated inhibitory signaling pathway
GO:0002431; P:Fc receptor mediated stimulatory signaling pathway
GO:0002553; P:histamine secretion by mast cell
GO:0045087; P:innate immune response
GO:0035556; P:intracellular signal transduction
GO:0031663; P:lipopolysaccharide-mediated signaling pathway
GO:0030889; P:negative regulation of B cell proliferation
GO:0070373; P:negative regulation of ERK1 and ERK2 cascade
GO:0043407; P:negative regulation of MAP kinase activity
GO:0070667; P:negative regulation of mast cell proliferation
GO:0002762; P:negative regulation of myeloid leukocyte differentiation
GO:0034136; P:negative regulation of toll-like receptor 2 signaling pathway
GO:0034144; P:negative regulation of toll-like receptor 4 signaling pathway
GO:0031175; P:neuron projection development
GO:0014003; P:oligodendrocyte development
GO:0018108; P:peptidyl-tyrosine phosphorylation
GO:0002576; P:platelet degranulation
GO:0030335; P:positive regulation of cell migration
GO:2000670; P:positive regulation of dendritic cell apoptotic process
GO:0060369; P:positive regulation of Fc receptor mediated stimulatory signaling pathway
GO:0060252; P:positive regulation of glial cell proliferation
GO:0070668; P:positive regulation of mast cell proliferation
GO:0010976; P:positive regulation of neuron projection development
GO:0070447; P:positive regulation of oligodendrocyte progenitor proliferation
GO:0043552; P:positive regulation of phosphatidylinositol 3-kinase activity
GO:0070304; P:positive regulation of stress-activated protein kinase signaling cascade
GO:0042531; P:positive regulation of tyrosine phosphorylation of STAT protein
GO:0002902; P:regulation of B cell apoptotic process
GO:0050855; P:regulation of B cell receptor signaling pathway
GO:0033628; P:regulation of cell adhesion mediated by integrin
GO:0001817; P:regulation of cytokine production
GO:0050707; P:regulation of cytokine secretion
GO:0045646; P:regulation of erythrocyte differentiation
GO:0050727; P:regulation of inflammatory response
GO:0043304; P:regulation of mast cell degranulation
GO:0090025; P:regulation of monocyte chemotaxis
GO:0090330; P:regulation of platelet aggregation
GO:0051279; P:regulation of release of sequestered calcium ion into cytosol
GO:0043200; P:response to amino acid stimulus
GO:0048678; P:response to axon injury
GO:0009743; P:response to carbohydrate stimulus
GO:0006974; P:response to DNA damage stimulus
GO:0032868; P:response to insulin stimulus
GO:0014070; P:response to organic cyclic compound
GO:0006991; P:response to sterol depletion
GO:0009636; P:response to toxin
GO:0002513; P:tolerance induction to self antigen
GO:0007169; P:transmembrane receptor protein tyrosine kinase signaling pathway
KEGG
rno:81515;
InterPros
IPR011009; Kinase-like_dom.
IPR000719; Prot_kinase_cat_dom.
IPR017441; Protein_kinase_ATP_BS.
IPR001245; Ser-Thr/Tyr_kinase_cat_dom.
IPR000980; SH2.
IPR001452; SH3_domain.
IPR008266; Tyr_kinase_AS.
IPR020635; Tyr_kinase_cat_dom.
Pfam
PF07714; Pkinase_Tyr; 1.
PF00017; SH2; 1.
PF00018; SH3_1; 1.
SMARTs
SM00252; SH2; 1.
SM00326; SH3; 1.
SM00219; TyrKc; 1.
Prosites
PS00107; PROTEIN_KINASE_ATP; 1.
PS50011; PROTEIN_KINASE_DOM; 1.
PS00109; PROTEIN_KINASE_TYR; 1.
PS50001; SH2; 1.
PS50002; SH3; 1.
Prints
PR00401; SH2DOMAIN.
PR00452; SH3DOMAIN.
PR00109; TYRKINASE.
Created Date20-Feb-2013